Good to know, I don't have an iPad but I looked at the app on my wife's one and at a glance it looked the same as the iPhone version.The smartphone and tablet versions of the E-Tube app are not the same. The tablet version gives you the battery diagnosis with charge cycles and remaining capacity.
The charging methods will not damage the cells the only difference between them can be the effect on the capacity. According to Shimano, the loss of 10% in a year is OK so in two years you can go down to 80% which will be considered as normal. Personally, I would like to keep it higher than that.
My two batteries are on 99% after a year, splitting the use almost equally. I put the question in the first post waiting for others to chime in to see if there is a real-life difference between charging methods and how fast the battery capacity goes down after a number of charging cycles...
I'd also be interested to see if anyone who has had batteries for a year and has just charged them up to 100% every time after a ride has the same or less capacity than you do. I'd like to keep my batteries in the best condition possible (they're expensive!), so will be adopting your method of charging/rotating just to be on the safe side.